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All functions

check_CH()
Check Calinski-Harabasz index
check_DB()
Check Davies-Bouldin Index
check_avgSil()
Check average Silhouette score index
define_rb()
Define Rare Biosphere
evaluate_k()
Evaluate k from all samples in a dataset
evaluate_sample_k()
Evaluate sample k
nice
V4-V5 16S rRNA gene amplicons, clean OTU table (N-ICE, 2015)
nice_env
Metadata of samples from OTU tables (N-ICE, 2015)
nice_raw
V4-V5 16S rRNA gene amplicons, raw OTU table (N-ICE, 2015)
nice_tidy
V4-V5 16S rRNA gene amplicons, clean OTU table in tidy/long format (N-ICE, 2015)
plot_ulrb()
Plot ulrb clustering results and silhouette scores
plot_ulrb_clustering()
Plot Rank Abundance Curve of classification results
plot_ulrb_silhouette()
Plot silhouette scores from clustering results
prepare_tidy_data()
Prepare data in tidy format
suggest_k()
Suggest k
ulrb-package
ulrb: Unsupervised Learning Based Definition of Microbial Rare Biosphere