Function reference
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check_CH() - Check Calinski-Harabasz index
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check_DB() - Check Davies-Bouldin Index
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check_avgSil() - Check average Silhouette score index
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define_rb() - Define Rare Biosphere
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evaluate_k() - Evaluate k from all samples in a dataset
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evaluate_sample_k() - Evaluate sample k
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nice - V4-V5 16S rRNA gene amplicons, clean OTU table (N-ICE, 2015)
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nice_env - Metadata of samples from OTU tables (N-ICE, 2015)
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nice_raw - V4-V5 16S rRNA gene amplicons, raw OTU table (N-ICE, 2015)
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nice_tidy - V4-V5 16S rRNA gene amplicons, clean OTU table in tidy/long format (N-ICE, 2015)
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plot_ulrb() - Plot ulrb clustering results and silhouette scores
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plot_ulrb_clustering() - Plot Rank Abundance Curve of classification results
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plot_ulrb_silhouette() - Plot silhouette scores from clustering results
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prepare_tidy_data() - Prepare data in tidy format
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suggest_k() - Suggest k
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ulrb-package - ulrb: Unsupervised Learning Based Definition of Microbial Rare Biosphere