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This is the "raw" data for the N-ICE dataset.

Usage

nice_raw

Format

nice_raw

A data frame with 524 rows and 17 columns:

ERR2044662, ERR2044663, ERR2044664, ERR2044665, ERR2044666, ERR2044667, ERR2044668, ERR2044669 and ERR2044670

Sample ID

OTU

OTU ID

Domain

Domain level classification of OTU

Phylum

Phylum level classification of OTU

Class

Class level classification of OTU

Order

Order level classification of OTU

Family

Family level classification of OTU

Genus

Genus level classification of OTU

Species

Species level classification of OTU

...

Details

The original sequencing results are available at European Nucleotide Archive (accession number: PRJEB15043). Those reads were processed into OTUs by MGnify platform (Study: MGYS00001922). The later study accession provides the table used in here.

This table contains the taxonomy and an abundance score for each taxonomic lineage, which we will refer to as "OTU" (Operational OTU) for simplicity sake.

For details on the sampling campaign in the Arctic ocean, sequencing protocols and bioinformatic processing, please see ref (de Sousa et al., 2019).

References

  • de Sousa, A. G. G., Tomasino, M. P., Duarte, P., Fernández-Méndez, M., Assmy, P., Ribeiro, H., Surkont, J., Leite, R. B., Pereira-Leal, J. B., Torgo, L., & Magalhães, C. (2019). Diversity and Composition of Pelagic Prokaryotic and Protist Communities in a Thin Arctic Sea-Ice Regime. Microbial Ecology, 78(2), 388–408. https://doi.org/10.1007/s00248-018-01314-2