V4-V5 16S rRNA gene amplicons, clean OTU table (N-ICE, 2015)

Table in "wide" format with abundance and taxonomic classification of each OTU.

Usage

nice

Format

`nice`

A data frame with 524 rows and 17 columns:

ERR2044662, ERR2044663, ERR2044664, ERR2044665, ERR2044666, ERR2044667, ERR2044668, ERR2044669 and ERR2044670: Sample ID
OTU: OTU ID
Domain: Domain level classification of OTU
Phylum: Phylum level classification of OTU
Class: Class level classification of OTU
Order: Order level classification of OTU
Family: Family level classification of OTU
Genus: Genus level classification of OTU
Species: Species level classification of OTU

Source

https://www.ebi.ac.uk/metagenomics/studies/MGYS00001922#analysis

Details

This OTU table was cleaned so that it only includes samples from 16S rRNA amplicon sequencing and no eukaryotes (similarly to Pascoal et al., 2022). Additionally, we added a column with a ID for each OTU.

For details on raw data, see nice_raw

References

Pascoal, F., Costa, R., Assmy, P., Duarte, P., & Magalhães, C. (2022). Exploration of the Types of Rarity in the Arctic Ocean from the Perspective of Multiple Methodologies. Microbial Ecology, 84(1), 59–72. https://doi.org/10.1007/s00248-021-01821-9